I6535

FASTA

Metadata

Reference

Data

identifier I6535
alternative_identifiers ['HB0032']
country Poland
continent Europe
region central Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment 1d_rel_I6581_I6582
latitude 50.09000015258789
longitude 18.100000381469727
sex M
site Kornice
site_detail -
mt_hg U5a2b
ychr_hg BT
year_from -2463
year_to -2205
date_detail 2463-2205 calBCE (3860±40 BP, Poz-66259)
bp 3860±40
c14_lab_code Poz-66259
c14_sample_tag True
c14_layer_tag -
avg_coverage 47.01340103149414
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}]