I6584

FASTA

Metadata

Reference

Data

identifier I6584
alternative_identifiers ['Hume 21A', '1964']
country Spain
continent Europe
region Iberia
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 40.220001220703125
longitude -3.759999990463257
sex F
site Humanejos, Madrid
site_detail -
mt_hg H4a1a+195
ychr_hg -
year_from -2500
year_to -2000
date_detail 2500-2000 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 185.8260040283203
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]