I6584
FASTA
Metadata
Reference
Data
| identifier | I6584 |
|---|---|
| alternative_identifiers | ['Hume 21A', '1964'] |
| country | Spain |
| continent | Europe |
| region | Iberia |
| culture | Bell Beaker |
| epoch | Copper Age |
| group | BBC |
| comment | - |
| latitude | 40.220001220703125 |
| longitude | -3.759999990463257 |
| sex | F |
| site | Humanejos, Madrid |
| site_detail | - |
| mt_hg | H4a1a+195 |
| ychr_hg | - |
| year_from | -2500 |
| year_to | -2000 |
| date_detail | 2500-2000 BCE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | 185.8260040283203 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}] |