I6617

FASTA

Metadata

Reference

Data

identifier I6617
alternative_identifiers ['Hume 19A', '14612 Ind 1']
country Spain
continent Europe
region Iberia
culture C_Iberia_CA
epoch Copper Age
group CAIB
comment -
latitude 40.220001220703125
longitude -3.759999990463257
sex M
site Humanejos, Madrid
site_detail -
mt_hg H1+16189
ychr_hg I2a2a1b2
year_from -2900
year_to -2300
date_detail 2900-2300 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 191.63499450683594
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}]