I6623

FASTA

Metadata

Reference

Data

identifier	I6623
alternative_identifiers	['RISE696', 'sample #6', 'A35 ext. El. 03-VII. Ue 03 Ind 2']
country	Spain
continent	Europe
region	Iberia
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	40.43899917602539
longitude	-3.500999927520752
sex	F
site	Camino de las Yeseras, Madrid
site_detail	-
mt_hg	U5b1f1a
ychr_hg	-
year_from	-1956
year_to	-1743
date_detail	1956-1743 calBCE (3525±40 BP, Ua-35021)
bp	3525±40
c14_lab_code	Ua-35021
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	220.5989990234375
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]