I7200

FASTA

Metadata

Reference

Data

identifier I7200
alternative_identifiers ['Grave 84 (2)']
country Czech Republic
continent Europe
region central Europe
culture Czech_EBA
epoch Bronze Age
group UNC
comment -
latitude 50.0504150390625
longitude 14.366726875305176
sex F
site Prague 5, Jinonice, Zahradnictví
site_detail -
mt_hg R1b1
ychr_hg -
year_from -2200
year_to -1700
date_detail 2200-1700 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 276.92999267578125
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '1095C', 'position': 1095, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-RNR1'], 'diseases': ['SNHL']}, {'allele': '1391C', 'position': 1391, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-RNR1'], 'diseases': ['found in 1 HCM patient']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]