I7280

FASTA

Metadata

Reference

Data

identifier I7280
alternative_identifiers ['Grave 78']
country Czech Republic
continent Europe
region central Europe
culture Corded Ware
epoch Neolithic
group CWC
comment -
latitude 50.189998626708984
longitude 14.157999992370605
sex M
site Brandýsek
site_detail -
mt_hg W5a
ychr_hg R1a1a
year_from -2900
year_to -2200
date_detail 2900-2200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 377.0880126953125
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]