I7575
FASTA
Metadata
Reference
Data
| identifier | I7575 |
|---|---|
| alternative_identifiers | ['1100'] |
| country | Great Britain |
| continent | Europe |
| region | British Isles |
| culture | England_MBA |
| epoch | Bronze Age |
| group | BABI |
| comment | - |
| latitude | 52.12240219116211 |
| longitude | -0.5113649964332581 |
| sex | M |
| site | Biddenham Loop, Bedfordshire, England |
| site_detail | - |
| mt_hg | U5a1d1 |
| ychr_hg | R1b1a1a2a1a2c |
| year_from | -1263 |
| year_to | -1043 |
| date_detail | 1263-1043 calBCE (2950±35 BP, SUERC-25498) |
| bp | 2950±35 |
| c14_lab_code | SUERC-25498 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 163.3090057373047 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}] |
I7575
