I7627
FASTA
Metadata
Reference
Data
| identifier | I7627 |
|---|---|
| alternative_identifiers | ['1327'] |
| country | Great Britain |
| continent | Europe |
| region | British Isles |
| culture | England_MBA |
| epoch | Bronze Age |
| group | BABI |
| comment | - |
| latitude | 52.12240219116211 |
| longitude | -0.5113649964332581 |
| sex | F |
| site | Biddenham Loop, Bedfordshire, England |
| site_detail | - |
| mt_hg | U4a2 |
| ychr_hg | - |
| year_from | -1410 |
| year_to | -1222 |
| date_detail | 1410-1222 calBCE (3055±35 BP, SUERC-25538) |
| bp | 3055±35 |
| c14_lab_code | SUERC-25538 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 226.0279998779297 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}] |
I7627
