Iceman

FASTA

Metadata

Reference

Data

identifier Iceman
alternative_identifiers ['Iceman', 'otzi', 'Ötzi']
country Italy
continent Europe
region southern Europe
culture Iceman_MN
epoch Copper Age
group CAIt
comment -
latitude 46.77000045776367
longitude 10.829999923706055
sex M
site Ötz valley, Tyrol
site_detail -
mt_hg K1
ychr_hg G2a2a1a2a1a
year_from -3484
year_to -3104
date_detail 3484-3104 calBCE (4555±34 BP, ETH-8345.1-2)
bp 4555±34
c14_lab_code ETH-8345.1-2
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Keller et al. 2012. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nature Communications, 3(1), ?. (link)
data_link https://www.ebi.ac.uk/ena/data/view/ERP001144
ychr_snps ['G2a2:CTS4367:15615340C->G', 'G2a:CTS6630:17022002C->T', 'G2a:F2274:16802506G->T', 'G2a:F3088:20813445G->A', 'G2a:L31:14028148C->A', 'G2a:M3393:21493984G->T', 'G2a:M3397:21605685G->C', 'G2a:M3408:22109159G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS7662:17597715C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3070:19493301A->G', 'G2:F3198:21401188G->T', 'G2:F3344:22697266G->A', 'G2:L89:7978725C->T', 'G2:M3446:6685638A->C', 'G2:P287:22072097G->T', 'G:CTS175:2785630A->T', 'G:CTS1013:7145960C->T', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS8023:17798903T->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10945:22848965A->G', 'G:CTS11185:22997377C->G', 'G:CTS11228:23023554C->A', 'G:CTS11331:23074190A->G', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:F2906:18957208C->T', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3593:21648433C->G', 'G:M3599:21939157G->A', 'G:M3604:22167631C->T', 'G:M3609:22651339C->T', 'G:P257:14432928G->A', 'G:PF2918:13679469G->A', 'G:PF2920:13824120T->G', 'G:PF2952:14577177G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:S1435:13658486C->Ghet', 'G:U21:15204710A->C', 'G2a:F2301:16861108G->A', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F3226:21663882C->A', 'G2:L156:17174741A->T', 'G2:M3469:7823146G->T', 'G2:M3488:8687693T->A', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G:CTS373:6716150T->C', 'G:CTS1612:13987230A->G', 'G:CTS2016.1:14155765G->A', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2215:14220356G->A', 'G:CTS4101:15397649A->G', 'G:CTS4479:15667235G->Ahet', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5414:16261165C->T', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11294:23059496G->A', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:L605:18393536G->C', 'G:L836:16896148G->A', 'G:M201:15027529G->T', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3274:8865637G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:M3600:21954611G->A', 'G:M3627:23782951G->A', 'G:Page94:2846401C->T', 'G:PF2956:14993358A->G', 'G:PF2958:15086183G->C', 'G:U12:14639427A->C', 'G2a:CTS6753:17090976C->T', 'G2a:F1980:15660640C->T', 'G2:CTS5666:16424034C->T', 'G:CTS5757:16469840A->G', 'G:CTS9707:19030998C->A', 'G:CTS10706:22714204G->T', 'G:CTS11400:23095144A->G', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:M3487:8602816G->C', 'G:M3595:21671839C->T', 'G2a2a1a2a:PF3237:17017831G->A', 'G2a2a1a2a:PF3238:17256431G->A', 'G2a2a1a2:L91:21645555G->C', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3168:17572142T->C', 'G2a2a:PF3185:22894488C->T', 'G2:PF3125:24485469C->T', 'G2a2a1a2:PF3233:8895958T->C', 'G2a2a1:PF3155:14006343T->C', 'G2a2a1:PF3160:14926732C->T', 'G2a2a:PF3149:7943188A->G', 'G2a2a:PF3175:18962113C->T', 'G2a2a:Z6178:7245721G->A', 'G2a:F1975:15588776A->C', 'G:S8863:4179056G->A', 'G2a2a1a:PF3177:21327198C->T', 'G2a2a1:FGC2268:22120867G->A', 'G2a2a1:S15710:14254785T->G', 'G2a2a:PF3151:9785736A->G', 'G2a:CTS1879:14108344G->A', 'G2a:CTS11463:23122426G->A', 'G2:M3579:21147058A->Ghet', 'G:CTS692:6955839A->Ghet', 'G:CTS5658:16419934T->C', 'G:CTS6073:16651032G->A', 'G:CTS7269:17393643T->Chet', 'G:M3248:7565637G->A', 'G:M3257:7991847G->A', 'G:PF2901:9523592C->A', 'G2a2a:PF3166:16735582T->G', 'G:CTS2174:14207268T->C', 'G:M3402:21790011C->T', 'G:M3478:8219021A->G', 'G:CTS1613:13987899A->T', 'G2a2a:PF3161:15702713A->C', 'G:CTS2624:14393739T->C', 'G:M3583:21362016T->C', 'G2a2a1a2a:FGC7739:24371391T->C', 'G2:M3581:21272579G->A', 'G:CTS2126:14190812C->T', 'G:CTS6894:17176229G->A', 'G:CTS9190:18737609C->A', 'G:U23:14423856G->A', 'G2a2a:PF3179:21394350C->G', 'G2:M3607:22542577G->A', 'G:CTS189:2795691G->Ahet', 'G2a2a1:PF3148:7816492G->A', 'G2a2a:PF3180:21600446A->T', 'G:CTS1029:7157834A->G', 'G2a2a:PF3176:21185138G->C', 'G2a2a:PF3167:16791005G->C', 'G2a2a:Z6281:15393669A->C', 'G2a2a1a2a1a:Z5675:21175091T->Ahet', 'G2a2a1a2a1a:FGC5671^:7652689G->A', 'G2a2a1a2a1a:FGC5672^:8524959C->T', 'G2a2a1a2a1a:FGC5696^:8393846C->A', 'G2a2a1a2a1a:FGC5721^:18392335T->Ghet', 'G2a2a1a2a1a:FGC8009^:17556414C->T', 'G2a2a1a2a1a:L166:23989884C->A', 'G2a2a1a2a1a:L167:23989903T->A', 'G2a2a1a2a1a:PF3178^:21363054T->C', 'G2a2a1a2a1a:Z6134^:6702979C->Thet', 'G2a2a1a2a1a:Z6209^:16476737G->Ahet', 'G2a2a1a2a1a:Z6213:17320353T->C', 'G2a2a1a2a1a:Z6219:15894131C->Thet', 'G2a2a1a2a1a:Z6287:16480879C->T', 'G2a2a1a2a1:FGC2271^:23069486G->A', 'G2a2a1a2a1:FGC5665:17974628A->G', 'G2a2a1a2a1:FGC5666:18405026C->T', 'G2a2a1a2a1:PF3239:17317628C->Thet', 'G2a2a1a2a1:PF3240:17589665C->T', 'G2a2a1a2a1:PF3244^:20813665A->G', 'G2a2a1a2a1:PF3247^:23981780G->A', 'G2a2a1a2a1:PF6846^:23534295A->G', 'G2a2a1a2a1:S11565^:8495432C->Thet', 'G2a2a1a2a1:Z6130:6785680A->G', 'G2a2a1a2a1:Z6198^:7821447T->Chet', 'G2a2a1a2a1:Z6277:13814902C->Thet', 'G2a2a1a2a:Z6492:21561633G->T', 'G2a2a1a2:S19852:17531217C->Thet', 'G2a2a1a2:S22038:19272314T->Ghet', 'G2a2a1a2:Z6177:6917775A->G', 'G2a2a1:PF3163:15842960C->A', 'G2a2a1:PF3171:18114133G->Ahet', 'G2a2a1:S17801:15998373A->Ghet', 'G2a2a1:Z6314:13645411G->Ahet', 'G2a2a:FGC2267:21288040C->T', 'G2a2a:FGC2273:23552204A->Ghet', 'G2a2a:PF3147:7738069G->Ahet', 'G2a2a:PF3159:14815695C->Ghet', 'G2a2a:PF3172:18129746A->C', 'G2a2a:PF3181:21808944C->Ahet', 'G2a2a:PF3184:22576860C->Thet', 'G2a:CTS9318:18819146T->Ahet', 'G2a:F3734:23475051T->C', 'G2a:M3401:21760742C->Thet', 'G2a:PF3079:22211250A->Ghet', 'G2:CTS4242:15507383T->Chet', 'G2:CTS7430:17476068G->T', 'G2:CTS10089:19248446G->Ahet', 'G2:F744:2866967G->A', 'G2:F1239:8482393C->Thet', 'G2:F2319:16903051A->Thet', 'G2:F3536:23768744C->Thet', 'G2:M3465:7571775G->Thet', 'G:CTS282:2871867A->Ghet', 'G:CTS440:6752082A->G', 'G:CTS827:7038432C->Ghet', 'G:CTS995:7132348G->Chet', 'G:CTS1010:7143549C->Thet', 'G:CTS1139:7231638A->Ghet', 'G:CTS1259:7298419C->Ahet', 'G:CTS1437:7397510C->Ghet', 'G:CTS1750:14047798T->Chet', 'G:CTS2517:14338503C->Thet', 'G:CTS5837:16499780T->Ahet', 'G:CTS7388:17453851T->C', 'G:CTS7674:17610571G->Ahet', 'G:CTS8531:18070349G->Chet', 'G:CTS9710:19033112G->Ahet', 'G:CTS10026:19215139A->Thet', 'G:CTS10393:19434150G->Thet', 'G:CTS10723:22730922C->Ghet', 'G:CTS12040:23440799C->Thet', 'G:CTS13035:28783924C->Ahet', 'G:F1383:8700380C->Thet', 'G:F1551:9448354A->Ghet', 'G:F2076:16185081A->Ghet', 'G:F3359:22834341C->T', 'G:L269:14958218T->C', 'G:L837:17853245A->Ghet', 'G:L1258:19431434T->Ahet', 'G:M3258:7992031T->Chet', 'G:M3464:7537950C->Thet', 'G:M3479:8231862G->Chet', 'G:M3580:21162869C->Ghet', 'G:M3591:21626642G->Thet', 'G:M3603:22163252G->Thet', 'G:M3628:23793740C->Ahet', 'G:PF2836:6478903G->Ahet', 'G:PF2908:10063021G->Ahet', 'G:PF3022:18265955A->Ghet', 'G:Z2540.1:4160142C->Thet', 'G:Z3239:10057445C->T', 'G:Z3262:13676268G->Ahet', 'G:Z6325:13806058C->Thet']
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]