Jan1
FASTA
Metadata
Reference
Data
| identifier | Jan1 |
|---|---|
| alternative_identifiers | ['poz262'] |
| country | Poland |
| continent | Europe |
| region | central Europe |
| culture | Hunter-Gatherer |
| epoch | Mesolithic |
| group | HGC |
| comment | - |
| latitude | 51.8445930480957 |
| longitude | 20.05550765991211 |
| sex | M |
| site | Janisławice, Kuyavia |
| site_detail | - |
| mt_hg | U5b1b1 |
| ychr_hg | - |
| year_from | -5644 |
| year_to | -5374 |
| date_detail | 5644-5374 BC |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | reconstructed |
| reference | Chyleński et al. 2017. Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology, 17(1), ?. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/popset/1162707264 |
| ychr_snps | - |
| mitopathos | [{'allele': '12063T', 'position': 12063, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '11527T', 'position': 11527, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['ND4 mutation set found in a Multiple Sclerosis patient']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13051A', 'position': 13051, 'status': 'Cfrm', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['LHON']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15170A', 'position': 15170, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CYB'], 'diseases': ['EXIT']}, {'allele': '1612T', 'position': 1612, 'status': 'Reported (VUS)', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TV'], 'diseases': ['LVNC (left ventricular noncompaction)']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '3632T', 'position': 3632, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '7520A', 'position': 7520, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TD'], 'diseases': ['Sporadic bilateral optic neuropathy']}, {'allele': '8078A', 'position': 8078, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO2'], 'diseases': ['DEAF']}, {'allele': '9438A', 'position': 9438, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO3'], 'diseases': ['LHON / gout']}] |
Jan1
