identifier Jan1
alternative_identifiers ['poz262']
country Poland
continent Europe
region central Europe
culture Hunter-Gatherer
epoch Mesolithic
group HGC
comment -
latitude 51.8445930480957
longitude 20.05550765991211
sex M
site Janisławice, Kuyavia
site_detail -
mt_hg U5b1b1
ychr_hg -
year_from -5644
year_to -5374
date_detail 5644-5374 BC
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source reconstructed
reference Chyleński et al. 2017. Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology, 17(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/popset/1162707264
ychr_snps -
mitopathos [{'allele': '12063T', 'position': 12063, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '11527T', 'position': 11527, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['ND4 mutation set found in a Multiple Sclerosis patient']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13051A', 'position': 13051, 'status': 'Cfrm', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['LHON']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15170A', 'position': 15170, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CYB'], 'diseases': ['EXIT']}, {'allele': '1612T', 'position': 1612, 'status': 'Reported (VUS)', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TV'], 'diseases': ['LVNC (left ventricular noncompaction)']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '3632T', 'position': 3632, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '7520A', 'position': 7520, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TD'], 'diseases': ['Sporadic bilateral optic neuropathy']}, {'allele': '8078A', 'position': 8078, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO2'], 'diseases': ['DEAF']}, {'allele': '9438A', 'position': 9438, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO3'], 'diseases': ['LHON / gout']}]