KK1

FASTA

Metadata

Reference

Data

identifier	KK1
alternative_identifiers	['Kotias', 'KotiasKlde']
country	Georgia
continent	Asia
region	Caucasus
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGE
comment	-
latitude	42.279998779296875
longitude	43.279998779296875
sex	M
site	Kotias Klde
site_detail	-
mt_hg	H13c
ychr_hg	J2a
year_from	-7940
year_to	-7600
date_detail	7940-7600 calBCE [7938-7580 calBCE (8665±65 BP, RTT-5246), 7946-7612 calBCE (8745±40, OxA-28256)]
bp	8665±65
c14_lab_code	RTT-5246
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Jones et al. 2015. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nature Communications, 6(1), ?. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11364
ychr_snps	['J2a:L152:22243566C->T', 'J2a:L212:22711465T->C', 'J2a:L559:21674327A->G', 'J2a:M410:2751678A->G', 'J2:L228:7771358C->T', 'J2:M172:14969634T->G', 'J:CTS687:6953311A->T', 'J:CTS852:7048870G->A', 'J:CTS1033:7163234A->G', 'J:CTS1250:7296343G->T', 'J:CTS2769:14476551T->A', 'J:CTS3732:15138096A->G', 'J:CTS3936:15277466G->A', 'J:CTS4204:15476324G->A', 'J:CTS5280:16180103A->G', 'J:CTS5628:16401405C->G', 'J:CTS5678:16427564A->T', 'J:CTS7028:17246058T->C', 'J:CTS7229:17367321C->A', 'J:CTS9877:19117262A->G', 'J:CTS10446:19460042G->C', 'J:CTS10858:22808236G->A', 'J:CTS11571:23163701C->A', 'J:CTS11750:23250894C->T', 'J:CTS11765:23255729A->T', 'J:CTS11787:23273016G->A', 'J:CTS12047:23443976A->Ghet', 'J:F1167:8393499G->A', 'J:F1181:8418927G->C', 'J:F1826:14705645G->A', 'J:F2114:16262942G->A', 'J:F2116:16268345C->G', 'J:F2174:16475682C->T', 'J:F2502:17495914G->A', 'J:F2746:18257026G->A', 'J:F2817:18695159C->T', 'J:F2839:18773505C->T', 'J:F3119:21097847C->T', 'J:F3176:21329083T->C', 'J:F3358:22785217G->A', 'J:FGC1599:21923739A->T', 'J:L60:14237131C->T', 'J:L778:23088142T->C', 'J:M304:22749853A->C', 'J:P209:19179335T->C', 'J:PF4505:7065239T->C', 'J:PF4513:7759610C->T', 'J:PF4519:8669451C->G', 'J:PF4524:10009851G->Ahet', 'J:PF4530:13597365C->T', 'J:PF4575:18410799A->G', 'J:PF4594:21495992C->A', 'J:PF4595:21858778C->A', 'J:YSC0000228:22172960G->T', 'J:Z7829:22465433G->C', 'J:CTS4349:15602183G->A', 'J:CTS5934:16562707C->T', 'J:CTS7483:17502703T->A', 'J:CTS8974:18588650A->G', 'J:F1744:14264859G->A', 'J:F2769:18552360G->C', 'J:F2973:19194316C->T', 'J:FGC1604:10038100G->A', 'J:FGC3271:10038717G->A', 'J:PF4521:9815201T->C', 'J:PF4567:17605948A->C', 'J:PF4591:21281892C->A', 'J:PF4598:22118776A->G', 'J:PF4619:23251880A->C', 'J:CTS7832:17693210A->G', 'J:CTS11291:23058442G->T', 'J:F3138:21148350G->A', 'J:CTS5545.1:16352755C->T', 'J:CTS6958:17210893G->A', 'J:CTS8938:18567169T->G', 'J:F1168:8393849G->A', 'J:PF4515:8308114G->A', 'J:PF4602:22246347T->A', 'J:CTS1068:7180976G->A', 'J:CTS2042:14162442T->A', 'J:CTS3872:15237163G->A', 'J:CTS4356:15607864T->A', 'J:CTS4937:15913787A->C', 'J:CTS5691:16434671C->T', 'J:CTS7565:17540740C->T', 'J:CTS7738:17637446T->Chet', 'J:CTS11211:23015968C->A', 'J:CTS12683:28669310C->G', 'J:CTS12887:28738577A->G', 'J:F1381:8687145G->T', 'J:F1973:15581303G->A', 'J:F2390:17136854T->Chet', 'J:F2707:18084124T->A', 'J:F3074:19508788G->A', 'J:F3347:22708656C->T', 'J:F4072:7292720T->C', 'J:FGC1601:5989356G->T', 'J:FGC1607:5067300G->A', 'J:PF4497:5111259A->G', 'J:PF4506:7126936G->T', 'J:PF4511:7517252G->T', 'J:PF4528:13247984G->T', 'J:PF4529:13431601G->T', 'J:PF4532:13627154C->T', 'J:PF4533:13943183G->C', 'J:PF4535:14084606G->T', 'J:PF4572:17996247A->Ghet', 'J:PF4593:21350830G->A', 'J:PF4596:21944571T->Chet', 'J:PF4622:23538307C->G', 'J:S19861:17534388T->A', 'J:Z7818:13481356G->Chet', 'J:Z16989:28470602A->C']
mitopathos	[{'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}]