Kretuonas4

FASTA

Metadata

Reference

Data

identifier	Kretuonas4
alternative_identifiers	-
country	Lithuania
continent	Europe
region	Baltic
culture	Narva
epoch	Neolithic
group	NEBL
comment	Eastern Middle Neolithic
latitude	55.2599983215332
longitude	26.097999572753906
sex	F
site	Kretuonas 1B, Lithuania
site_detail	grave 1
mt_hg	U5b1b1a
ychr_hg	-
year_from	-5500
year_to	-2900
date_detail	5500/5300–3100/2900 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	8.791999816894531
sequence_source	fasta
reference	Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MG429007.1
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '3391A', 'position': 3391, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}]