Kunila1

FASTA

Metadata

Reference

Data

identifier	Kunila1
alternative_identifiers	['MA971']
country	Estonia
continent	Europe
region	Baltic
culture	Corded Ware
epoch	Neolithic
group	CWC
comment	-
latitude	58.592498779296875
longitude	26.34166717529297
sex	M
site	Kursi, Jõgeva county
site_detail	-
mt_hg	U5b1b
ychr_hg	R1a-Z645
year_from	-2850
year_to	-2050
date_detail	4800–4000 calBP
bp	3960±40
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	58.66999816894531
sequence_source	bam
reference	Saag et al. 2017. Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe. Current Biology, 27(14), 2185-2193.e6. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB21037
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]