Kunila2
FASTA
Metadata
Reference
Data
| identifier | Kunila2 |
|---|---|
| alternative_identifiers | ['MA973'] |
| country | Estonia |
| continent | Europe |
| region | Baltic |
| culture | Corded Ware |
| epoch | Neolithic |
| group | CWC |
| comment | - |
| latitude | 58.592498779296875 |
| longitude | 26.34166717529297 |
| sex | M |
| site | Kursi, Jõgeva county |
| site_detail | - |
| mt_hg | J1c3 |
| ychr_hg | R1a1-Z283 |
| year_from | -2696 |
| year_to | -2390 |
| date_detail | 4576–4340 calBP |
| bp | 3960±40 |
| c14_lab_code | Poz-10825 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 129.52000427246094 |
| sequence_source | bam |
| reference | Saag et al. 2017. Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe. Current Biology, 27(14), 2185-2193.e6. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB21037 |
| ychr_snps | - |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '185A', 'position': 185, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '295T', 'position': 295, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '462T', 'position': 462, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}] |
Kunila2
