LHSZ17

FASTA

Metadata

Reference

Data

identifier	LHSZ17
alternative_identifiers	['Sz 17']
country	Hungary
continent	Europe
region	Pannonia
culture	Longobards
epoch	Middle Ages
group	LONG
comment	-
latitude	46.78821563720703
longitude	17.842775344848633
sex	U
site	Szólád
site_detail	-
mt_hg	U5b2a1a1
ychr_hg	-
year_from	500
year_to	600
date_detail	500-600 CE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	164.39999389648438
sequence_source	fasta
reference	Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MG182468
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]