LIAV_4

FASTA

Metadata

Reference

Data

identifier LIAV_4
alternative_identifiers -
country Italy
continent Europe
region Southern Europe
culture pre-Roman
epoch Iron Age
group IAIt
comment -
latitude 40.81927490234375
longitude 16.398099899291992
sex F
site Botromagno
site_detail Tomba 11
mt_hg U4b1a1a1
ychr_hg -
year_from -700
year_to -300
date_detail 7th–4th century BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 316.0
sequence_source reconstructed
reference Emery et al. 2018. Ancient Roman mitochondrial genomes and isotopes reveal relationships and geographic origins at the local and pan-Mediterranean scales. Journal of Archaeological Science: Reports, 20(?), 200-209. (link)
data_link https://www.ncbi.nlm.nih.gov/popset/?term=1391840518
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12297C', 'position': 12297, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['Dilated Cardiomyopathy / Leigh Syndrome / Failure to Thrive & LA']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]