LICOL30
FASTA
Metadata
Reference
Data
identifier | LICOL30 |
---|---|
alternative_identifiers | ['Col 30'] |
country | Italy |
continent | Europe |
region | southern Europe |
culture | Longobards |
epoch | Middle Ages |
group | LONG |
comment | - |
latitude | 45.078880310058594 |
longitude | 7.566359996795654 |
sex | U |
site | Collegno |
site_detail | - |
mt_hg | I1b |
ychr_hg | - |
year_from | 570 |
year_to | 800 |
date_detail | 570-800 CE |
bp | - |
c14_lab_code | - |
c14_sample_tag | - |
c14_layer_tag | - |
avg_coverage | 163.47999572753906 |
sequence_source | fasta |
reference | Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG182507 |
ychr_snps | - |
mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '9966A', 'position': 9966, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CO3'], 'diseases': ['LHON possible helper variant']}] |
LICOL30