LICOL36
FASTA
Metadata
Reference
Data
identifier | LICOL36 |
---|---|
alternative_identifiers | ['Col 36'] |
country | Italy |
continent | Europe |
region | southern Europe |
culture | Longobards |
epoch | Middle Ages |
group | LONG |
comment | - |
latitude | 45.078880310058594 |
longitude | 7.566359996795654 |
sex | U |
site | Collegno |
site_detail | - |
mt_hg | X2b+226 |
ychr_hg | - |
year_from | 570 |
year_to | 800 |
date_detail | 570-800 CE |
bp | - |
c14_lab_code | - |
c14_sample_tag | - |
c14_layer_tag | - |
avg_coverage | 137.02000427246094 |
sequence_source | fasta |
reference | Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG182509 |
ychr_snps | - |
mitopathos | [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '15927A', 'position': 15927, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['LHON / Multiple Sclerosis / DEAF1555 increased penetrance / CHD']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '8393T', 'position': 8393, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ATP8'], 'diseases': ['Reversible brain pseudoatrophy']}] |
LICOL36