LICOL38

FASTA

Metadata

Reference

Data

identifier LICOL38
alternative_identifiers ['Col 38']
country Italy
continent Europe
region southern Europe
culture Longobards
epoch Middle Ages
group LONG
comment -
latitude 45.078880310058594
longitude 7.566359996795654
sex U
site Collegno
site_detail -
mt_hg X2
ychr_hg -
year_from 570
year_to 800
date_detail 570-800 CE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 161.6199951171875
sequence_source fasta
reference Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link)
data_link https://www.ncbi.nlm.nih.gov/nuccore/MG182510
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}]