LRCMUS66
FASTA
Metadata
Reference
Data
identifier | LRCMUS66 |
---|---|
alternative_identifiers | ['Mus 66'] |
country | Czech Republic |
continent | Europe |
region | central Europe |
culture | Longobards |
epoch | Middle Ages |
group | LONG |
comment | - |
latitude | 48.89586639404297 |
longitude | 16.59980583190918 |
sex | U |
site | Mušov-Roviny |
site_detail | - |
mt_hg | T2e |
ychr_hg | - |
year_from | 500 |
year_to | 600 |
date_detail | 500-600 CE |
bp | - |
c14_lab_code | - |
c14_sample_tag | - |
c14_layer_tag | - |
avg_coverage | 119.83000183105469 |
sequence_source | fasta |
reference | Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG182447 |
ychr_snps | - |
mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
LRCMUS66