Loschbour

FASTA

Metadata

Reference

Data

identifier	Loschbour
alternative_identifiers	['Loschbour']
country	Luxembourg
continent	Europe
region	western Europe
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGW
comment	-
latitude	49.810001373291016
longitude	6.400000095367432
sex	F
site	Echternach
site_detail	-
mt_hg	U5b1a
ychr_hg	-
year_from	-6220
year_to	-5990
date_detail	6220-5990 calBCE
bp	-
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Lazaridis et al. 2014. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature, 513(7518), 409-413. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB6272
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]