| identifier |
MA1 |
| alternative_identifiers |
['Malta1'] |
| country |
Russia |
| continent |
Asia |
| region |
Siberia |
| culture |
Hunter-Gatherer |
| epoch |
Upper Paleolithic |
| group |
HGE |
| comment |
- |
| latitude |
52.900001525878906 |
| longitude |
103.5 |
| sex |
M |
| site |
Mal'ta |
| site_detail |
- |
| mt_hg |
- |
| ychr_hg |
R |
| year_from |
-22570 |
| year_to |
-22140 |
| date_detail |
22570-22140 calBCE (20240±60 BP, UCIAMS-79666) |
| bp |
20240±60 |
| c14_lab_code |
UCIAMS-79666 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Raghavan et al. 2014. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 505(7481), 87-91.
(link)
|
| data_link |
https://www.ncbi.nlm.nih.gov/sra/?term=SRP029640
|
| ychr_snps |
['R:CTS3622:15078469C->G', 'R:L1347:22818334C->T', 'R:M764:21263029G->A', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:M718:17334694G->T', 'R:P280:21843090C->G', 'R:P285:19267344C->A', 'R:CTS5815:16491135C->T', 'R:CTS6417:16882568T->C', 'R:CTS7876:17722802G->A', 'R:F652:23631629C->A', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R:CTS3229:14750668A->C', 'R:CTS9005:18611644A->T', 'R:CTS11075:22934109A->G', 'R:PF5938:18744476T->C']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}]
|