MS10589

FASTA

Metadata

Reference

Data

identifier MS10589
alternative_identifiers -
country Spain
continent Europe
region Mediterranean
culture pre-Phoenician
epoch Copper Age
group CASp
comment Late Copper Age/Early-Bronze Age, Formentera
latitude 38.72654724121094
longitude 1.445781946182251
sex U
site Ca na Costa, Formentera
site_detail Ca Na Costa Sector 3
mt_hg K1a1b1
ychr_hg -
year_from -900
year_to -750
date_detail -
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 3.552000045776367
sequence_source fasta
reference Zalloua et al. 2018. Ancient DNA of Phoenician remains indicates discontinuity in the settlement history of Ibiza. Scientific Reports, 8(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/nuccore/MH043585.1
ychr_snps -
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '114T', 'position': 114, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['BD-associated']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]