NLIAR13
FASTA
Metadata
Reference
Data
identifier | NLIAR13 |
---|---|
alternative_identifiers | ['Ar 13'] |
country | Italy |
continent | Europe |
region | southern Europe |
culture | Italy_EMA |
epoch | Middle Ages |
group | MAIt |
comment | Early Medieval |
latitude | 45.0728645324707 |
longitude | 7.68797492980957 |
sex | U |
site | Torino-Giardini Reali |
site_detail | - |
mt_hg | U5a1b1 |
ychr_hg | - |
year_from | 500 |
year_to | 1000 |
date_detail | 500-1000 CE |
bp | - |
c14_lab_code | - |
c14_sample_tag | - |
c14_layer_tag | - |
avg_coverage | 23.559999465942383 |
sequence_source | fasta |
reference | Vai et al. 2019. A genetic perspective on Longobard-Era migrations. European Journal of Human Genetics, 27(4), 647-656. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG182533 |
ychr_snps | - |
mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}] |
NLIAR13