NW_54

FASTA

Metadata

Reference

Data

identifier	NW_54
alternative_identifiers	['SAMEA104354399']
country	Germany
continent	Europe
region	central Europe
culture	Germany_EMA
epoch	Middle Ages
group	MAGe
comment	-
latitude	48.98910140991211
longitude	12.140700340270996
sex	F
site	Burgweinting – Nord-West II
site_detail	2 silver-gilt bow brooches, 2 bird brooches
mt_hg	C4a1a
ychr_hg	-
year_from	388
year_to	532
date_detail	388 – 532 cal AD
bp	1624±20
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	198.89999389648438
sequence_source	bam
reference	Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA104354399
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '3552A', 'position': 3552, 'status': 'Reported /hg C marker', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['Resistance to high altitude pulmonary edema (HAPE)']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]