PCA0002

FASTA

Metadata

Reference

Data

identifier PCA0002
alternative_identifiers -
country Poland
continent Europe
region central Europe
culture Wielbark
epoch Middle Ages
group MAPl
comment -
latitude 52.59000015258789
longitude 16.780000686645508
sex M
site Kowalewko, Greater Poland
site_detail -
mt_hg H28a1
ychr_hg -
year_from 10
year_to 375
date_detail 10-375 CE
bp -
c14_lab_code -
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/sra/PRJNA354503
ychr_snps -
mitopathos [{'allele': '5698A', 'position': 5698, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TN'], 'diseases': ['CPEO / MM']}, {'allele': '5703A', 'position': 5703, 'status': 'Cfrm', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TN'], 'diseases': ['CPEO / MM']}, {'allele': '6150A', 'position': 6150, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / enriched in POAG cohort']}, {'allele': '7453A', 'position': 7453, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TS1'], 'diseases': ['Fatal neonatal lactic acidosis / Neonatal lactic acidosis / exercise intolerance / mild ID']}]