PCA0006

FASTA

Metadata

Reference

Data

identifier	PCA0006
alternative_identifiers	-
country	Poland
continent	Europe
region	central Europe
culture	Wielbark
epoch	Middle Ages
group	MAPl
comment	-
latitude	52.59000015258789
longitude	16.780000686645508
sex	F
site	Kowalewko, Greater Poland
site_detail	-
mt_hg	U5a1d1
ychr_hg	-
year_from	80
year_to	120
date_detail	80-110/120 CE
bp	-
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/sra/PRJNA354503
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '14459A', 'position': 14459, 'status': 'Cfrm', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND6'], 'diseases': ['LDYT / Leigh Disease / dystonia / carotid atherosclerosis risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '4320T', 'position': 4320, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TI'], 'diseases': ['Mitochondrial Encephalocardiomyopathy']}, {'allele': '4327C', 'position': 4327, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TI'], 'diseases': ['Ataxia+ / with RRF and COX deficiency']}, {'allele': '5532A', 'position': 5532, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TW'], 'diseases': ['Gastrointestinal Syndrome']}]