PCA0007
FASTA
Metadata
Reference
Data
| identifier | PCA0007 |
|---|---|
| alternative_identifiers | - |
| country | Poland |
| continent | Europe |
| region | central Europe |
| culture | Wielbark |
| epoch | Middle Ages |
| group | MAPl |
| comment | - |
| latitude | 52.59000015258789 |
| longitude | 16.780000686645508 |
| sex | F |
| site | Kowalewko, Greater Poland |
| site_detail | - |
| mt_hg | W1 |
| ychr_hg | - |
| year_from | 80 |
| year_to | 260 |
| date_detail | 80-260 CE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/sra/PRJNA354503 |
| ychr_snps | - |
| mitopathos | [{'allele': '3635A', 'position': 3635, 'status': 'Cfrm', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '4450A', 'position': 4450, 'status': 'Cfrm', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Myopathy / MELAS / Leigh Syndrome']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}] |