PCA0026

FASTA

Metadata

Reference

Data

identifier PCA0026
alternative_identifiers -
country Poland
continent Europe
region central Europe
culture Wielbark
epoch Middle Ages
group MAPl
comment -
latitude 52.59000015258789
longitude 16.780000686645508
sex F
site Kowalewko, Greater Poland
site_detail -
mt_hg T2b16
ychr_hg -
year_from 80
year_to 260
date_detail 80-260 CE
bp -
c14_lab_code -
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/sra/PRJNA354503
ychr_snps -
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '1310T', 'position': 1310, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF-associated']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]