PCA0036

FASTA

Metadata

Reference

Data

identifier PCA0036
alternative_identifiers -
country Poland
continent Europe
region central Europe
culture Wielbark
epoch Middle Ages
group MAPl
comment -
latitude 52.59000015258789
longitude 16.780000686645508
sex M
site Kowalewko, Greater Poland
site_detail -
mt_hg U5b1d1
ychr_hg -
year_from 80
year_to 260
date_detail 80-260 CE
bp -
c14_lab_code -
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/sra/PRJNA354503
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '869T', 'position': 869, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['found in 1 HCM patient']}]