PCA0037

FASTA

Metadata

Reference

Data

identifier	PCA0037
alternative_identifiers	-
country	Poland
continent	Europe
region	central Europe
culture	Wielbark
epoch	Middle Ages
group	MAPl
comment	-
latitude	52.59000015258789
longitude	16.780000686645508
sex	M
site	Kowalewko, Greater Poland
site_detail	-
mt_hg	T2e
ychr_hg	-
year_from	10
year_to	375
date_detail	10-375 CE
bp	-
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Stolarek et al. 2018. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age. Scientific Reports, 8(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/sra/PRJNA354503
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '1624T', 'position': 1624, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TV'], 'diseases': ['Leigh Syndrome']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}]