Popovo2

FASTA

Metadata

Reference

Data

identifier	Popovo2
alternative_identifiers	-
country	Russia
continent	Europe
region	Baltic
culture	Eastern/Mesolithic Hunter-Gatherers
epoch	Mesolithic
group	HGN
comment	-
latitude	61.263999938964844
longitude	38.904998779296875
sex	M
site	Popovo, Karelia, Russia
site_detail	grave 4, MAE RAS 6836-4
mt_hg	U4d
ychr_hg	-
year_from	-7500
year_to	-5000
date_detail	7500–5000 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	0.06400000303983688
sequence_source	fasta
reference	Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MG428993.1
ychr_snps	-
mitopathos	[{'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]