identifier RISE1159
alternative_identifiers ['ERS2696716']
country Poland
continent Europe
region central Europe
culture Globular Amphora
epoch Neolithic
group GAC
comment -
latitude 50.1775016784668
longitude 20.5130558013916
sex F
site Koszyce
site_detail site 3
mt_hg T2b
ychr_hg -
year_from -2880
year_to -2776
date_detail 2880-2776 BCE
bp 4173±22
c14_lab_code KF1240
c14_sample_tag True
c14_layer_tag -
avg_coverage 2.799999952316284
sequence_source bam
reference Schroeder et al. 2019. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proceedings of the National Academy of Sciences, 116(22), 10705-10710. (link)
data_link https://www.ebi.ac.uk/ena/data/view/SAMEA4877749
ychr_snps -
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]