RISE1159

FASTA

Metadata

Reference

Data

identifier	RISE1159
alternative_identifiers	['ERS2696716']
country	Poland
continent	Europe
region	central Europe
culture	Globular Amphora
epoch	Neolithic
group	GAC
comment	-
latitude	50.1775016784668
longitude	20.5130558013916
sex	F
site	Koszyce
site_detail	site 3
mt_hg	T2b
ychr_hg	-
year_from	-2880
year_to	-2776
date_detail	2880-2776 BCE
bp	4173±22
c14_lab_code	KF1240
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	2.799999952316284
sequence_source	bam
reference	Schroeder et al. 2019. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proceedings of the National Academy of Sciences, 116(22), 10705-10710. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA4877749
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]