RISE1161

FASTA

Metadata

Reference

Data

identifier RISE1161
alternative_identifiers ['ERS2696718']
country Poland
continent Europe
region central Europe
culture Globular Amphora
epoch Neolithic
group GAC
comment -
latitude 50.1775016784668
longitude 20.5130558013916
sex F
site Koszyce
site_detail site 3
mt_hg H27+16093
ychr_hg -
year_from -2880
year_to -2776
date_detail 2880-2776 BCE
bp 4230±36
c14_lab_code KF1242
c14_sample_tag True
c14_layer_tag -
avg_coverage 1.2999999523162842
sequence_source bam
reference Schroeder et al. 2019. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proceedings of the National Academy of Sciences, 116(22), 10705-10710. (link)
data_link https://www.ebi.ac.uk/ena/data/view/SAMEA4877751
ychr_snps -
mitopathos [{'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}]