RISE1170

FASTA

Metadata

Reference

Data

identifier	RISE1170
alternative_identifiers	['ERS2696727']
country	Poland
continent	Europe
region	central Europe
culture	Globular Amphora
epoch	Neolithic
group	GAC
comment	-
latitude	50.1775016784668
longitude	20.5130558013916
sex	F
site	Koszyce
site_detail	site 3
mt_hg	K1a1b1e
ychr_hg	-
year_from	-2880
year_to	-2776
date_detail	2880-2776 BCE
bp	4213±26
c14_lab_code	KF1251
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	3.700000047683716
sequence_source	bam
reference	Schroeder et al. 2019. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proceedings of the National Academy of Sciences, 116(22), 10705-10710. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA4877760
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '114T', 'position': 114, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['BD-associated']}, {'allele': '1095C', 'position': 1095, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-RNR1'], 'diseases': ['SNHL']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '4437T', 'position': 4437, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TM'], 'diseases': ['Hypotonia / seizure / muscle weakness / lactic acidosis / hearing loss']}, {'allele': '5703A', 'position': 5703, 'status': 'Cfrm', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TN'], 'diseases': ['CPEO / MM']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]