RISE374

FASTA

Metadata

Reference

Data

identifier RISE374
alternative_identifiers ['Grave # 147']
country Hungary
continent Europe
region Pannonia
culture Maros
epoch Bronze Age
group BAHu
comment -
latitude 46.220001220703125
longitude 20.200000762939453
sex M
site Szöreg, Sziv Utca
site_detail -
mt_hg T2b
ychr_hg G2a2a1a2a
year_from -1866
year_to -1619
date_detail 1866-1619 calBCE (3402±34 BP, OxA-30989)
bp 3402±34
c14_lab_code OxA-30989
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps ['G2a:F3088:20813445G->A', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:P287:22072097G->T', 'G:CTS10723:22730922C->G', 'G:M3474:7930724C->A', 'G:M3485:8563874C->T', 'G:U21:15204710A->C', 'G:CTS2136:14195292A->G', 'G:CTS2215:14220356G->A', 'G:CTS6483:16929270C->T', 'G:L402:15204708T->G', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G2:CTS4242:15507383T->C', 'G:M3402:21790011C->T', 'G2a2a1a2a:FGC7739:24371391T->C', 'G2a2a:S16017:14458744A->G']
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]