RISE374
FASTA
Metadata
Reference
Data
| identifier | RISE374 |
|---|---|
| alternative_identifiers | ['Grave # 147'] |
| country | Hungary |
| continent | Europe |
| region | Pannonia |
| culture | Maros |
| epoch | Bronze Age |
| group | BAHu |
| comment | - |
| latitude | 46.220001220703125 |
| longitude | 20.200000762939453 |
| sex | M |
| site | Szöreg, Sziv Utca |
| site_detail | - |
| mt_hg | T2b |
| ychr_hg | G2a2a1a2a |
| year_from | -1866 |
| year_to | -1619 |
| date_detail | 1866-1619 calBCE (3402±34 BP, OxA-30989) |
| bp | 3402±34 |
| c14_lab_code | OxA-30989 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB9021 |
| ychr_snps | ['G2a:F3088:20813445G->A', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:P287:22072097G->T', 'G:CTS10723:22730922C->G', 'G:M3474:7930724C->A', 'G:M3485:8563874C->T', 'G:U21:15204710A->C', 'G:CTS2136:14195292A->G', 'G:CTS2215:14220356G->A', 'G:CTS6483:16929270C->T', 'G:L402:15204708T->G', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G2:CTS4242:15507383T->C', 'G:M3402:21790011C->T', 'G2a2a1a2a:FGC7739:24371391T->C', 'G2a2a:S16017:14458744A->G'] |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
RISE374
