RISE391

FASTA

Metadata

Reference

Data

identifier RISE391
alternative_identifiers ['kurgan 7 burial 36']
country Kazakhstan
continent Asia
region Pontic steppe
culture Sintashta
epoch Bronze Age
group BAKa
comment -
latitude 50.59000015258789
longitude 56.83000183105469
sex F
site Tanabergen
site_detail Site II
mt_hg N1a1a1a1
ychr_hg -
year_from -2120
year_to -1887
date_detail 2120-1887 calBCE (3612±34 BP, OxA-30998)
bp 3612±34
c14_lab_code OxA-30998
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps -
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '3336C', 'position': 3336, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ND1'], 'diseases': ['Carotid atherosclerosis risk']}, {'allele': '669C', 'position': 669, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF']}]