RISE392

FASTA

Metadata

Reference

Data

identifier	RISE392
alternative_identifiers	['kurgan 4 burial B']
country	Russia
continent	Asia
region	Pontic steppe
culture	Sintashta
epoch	Bronze Age
group	BARu
comment	-
latitude	53.880001068115234
longitude	59.08000183105469
sex	M
site	Stepnoe Cemetery
site_detail	Cemetery VII
mt_hg	J2b1a2a
ychr_hg	R1a1a1b
year_from	-2126
year_to	-1896
date_detail	2126-1896 calBCE (3626±33 BP, OxA-30999)
bp	3626±33
c14_lab_code	OxA-30999
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1a1a:L168:16202177A->G', 'R1:CTS2680:14424045C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R:F82:7548900G->A', 'R:M718:17334694G->T', 'R1a1a:M515:14054623T->A', 'R1a:L63:18162834T->C', 'R1a:L146:23473201T->A', 'R1:P233:21166358T->G', 'R1:P238:7771131G->A', 'R:CTS6417:16882568T->C', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:P227:21409706G->C', 'R:CTS10663:22687547A->T', 'R:F765:24360964G->A', 'R:CTS9005:18611644A->T', 'R1a1a1b:S224:8245045C->T', 'R1:CTS4075:15377120A->G', 'R1:CTS7085:17275703G->A', 'R:M628:8027859G->C']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15257A', 'position': 15257, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['LHON']}, {'allele': '15812A', 'position': 15812, 'status': 'Reported / Secondary', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['LHON']}, {'allele': '295T', 'position': 295, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]