RISE395

FASTA

Metadata

Reference

Data

identifier RISE395
alternative_identifiers ['kurgan 25 burial 12']
country Russia
continent Asia
region Pontic steppe
culture Sintashta
epoch Bronze Age
group BARu
comment -
latitude 52.63999938964844
longitude 59.540000915527344
sex F
site Bol'shekaraganskii
site_detail -
mt_hg U2e1h
ychr_hg -
year_from -1960
year_to -1756
date_detail 1960-1756 calBCE (3540±33 BP, OxA-30996)
bp 3540±33
c14_lab_code OxA-30996
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]