RISE397
FASTA
Metadata
Reference
Data
| identifier | RISE397 |
|---|---|
| alternative_identifiers | ['tomb 6 skeleton 2'] |
| country | Armenia |
| continent | Asia |
| region | Caucasus |
| culture | Lchashen-Metsamor |
| epoch | Iron Age |
| group | IACA |
| comment | Early Iron Age, updated according to Margaryan et al. 2017 |
| latitude | 39.25 |
| longitude | 46.349998474121094 |
| sex | M |
| site | Kapan |
| site_detail | - |
| mt_hg | T1a2 |
| ychr_hg | R1b1a1a2 |
| year_from | -1048 |
| year_to | -855 |
| date_detail | 1048-855 calBCE (2807±31 BP, OxA-31002) |
| bp | 2807±31 |
| c14_lab_code | OxA-31002 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 192.1999969482422 |
| sequence_source | fasta |
| reference | Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/nuccore/MF362737 |
| ychr_snps | - |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
RISE397
