RISE413

FASTA

Metadata

Reference

Data

identifier	RISE413
alternative_identifiers	['#11']
country	Armenia
continent	Asia
region	Caucasus
culture	Trialeti-Vanadzor 2
epoch	Bronze Age
group	BACA
comment	Middle Bronze Age, updated according to Margaryan et al. 2017
latitude	40.150001525878906
longitude	45.25
sex	M
site	Nerqin Getashen
site_detail	-
mt_hg	T2c1f
ychr_hg	R1b1a1a
year_from	-1906
year_to	-1698
date_detail	1906-1698 calBCE (3493±34 BP, UBA-28941)
bp	3493±34
c14_lab_code	UBA-28941
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	118.19999694824219
sequence_source	fasta
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362741
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '6261A', 'position': 6261, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / LHON']}]