RISE416

FASTA

Metadata

Reference

Data

identifier	RISE416
alternative_identifiers	['#14']
country	Armenia
continent	Asia
region	Caucasus
culture	Lchashen-Metsamor
epoch	Bronze Age
group	BACA
comment	Late Bronze Age, updated according to Margaryan et al. 2017
latitude	40.150001525878906
longitude	45.25
sex	M
site	Nerqin Getashen
site_detail	-
mt_hg	K1a17a
ychr_hg	CT
year_from	-1643
year_to	-1445
date_detail	1643-1445 calBCE (3259±40 BP, UBA-27942)
bp	3259±40
c14_lab_code	UBA-27942
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	130.3000030517578
sequence_source	fasta
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362742
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]