RISE423

FASTA

Metadata

Reference

Data

identifier	RISE423
alternative_identifiers	['#21']
country	Armenia
continent	Asia
region	Caucasus
culture	Lchashen-Metsamor
epoch	Bronze Age
group	BACA
comment	Late Bronze Age, updated according to Margaryan et al. 2017
latitude	40.150001525878906
longitude	45.25
sex	M
site	Nerqin Getashen
site_detail	-
mt_hg	T2a3
ychr_hg	E1b1b1b2a
year_from	-1402
year_to	-1211
date_detail	1402-1211 calBCE (3038±32 BP, UBA-27944)
bp	3038±32
c14_lab_code	UBA-27944
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	133.1999969482422
sequence_source	fasta
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362743
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]