RISE431

FASTA

Metadata

Reference

Data

identifier RISE431
alternative_identifiers ['Barrow 4', 'skeleton 2']
country Poland
continent Europe
region central Europe
culture Corded Ware
epoch Neolithic
group CWC
comment Corded Ware or Proto Unetice
latitude 52.13999938964844
longitude 16.540000915527344
sex M
site Leki Male
site_detail -
mt_hg T2e
ychr_hg R1b1a
year_from -2286
year_to -2048
date_detail 2286-2048 calBCE (3762±27 BP, OxA-27967)
bp 3762±27
c14_lab_code OxA-27967
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps ['R1b1a:L754:22889018G->A', 'R1:CTS997:7132713G->A', 'R:CTS7876:17722802G->A', 'R:L1225:22733758C->G', 'R1:CTS3123:14674176A->C']
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}]