RISE434
FASTA
Metadata
Reference
Data
| identifier | RISE434 |
|---|---|
| alternative_identifiers | - |
| country | Germany |
| continent | Europe |
| region | central Europe |
| culture | Corded Ware |
| epoch | Neolithic |
| group | CWC |
| comment | - |
| latitude | 48.93000030517578 |
| longitude | 12.260000228881836 |
| sex | M |
| site | Tiefbrunn |
| site_detail | - |
| mt_hg | U4 |
| ychr_hg | R1 |
| year_from | -2880 |
| year_to | -2630 |
| date_detail | 2880-2630 calBCE (4161±34 BP, UBA-27946) |
| bp | 4161±34 |
| c14_lab_code | UBA-27946 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB9021 |
| ychr_snps | ['R1:CTS5611:16394489T->G', 'R:M651:9889199G->A', 'R:M718:17334694G->T'] |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}] |
RISE434
