RISE436

FASTA

Metadata

Reference

Data

identifier RISE436
alternative_identifiers -
country Germany
continent Europe
region central Europe
culture Corded Ware
epoch Neolithic
group CWC
comment -
latitude 48.93000030517578
longitude 12.260000228881836
sex M
site Tiefbrunn
site_detail -
mt_hg U5b1c2
ychr_hg R1b1
year_from -2868
year_to -2580
date_detail 2868-2580 calBCE (4124±31 BP, UBA-27948)
bp 4124±31
c14_lab_code UBA-27948
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps ['R:CTS7880:17723850C->T', 'R1b1:L1349:22722580T->C']
mitopathos [{'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]