RISE446

FASTA

Metadata

Reference

Data

identifier	RISE446
alternative_identifiers	['burial 13 male']
country	Germany
continent	Europe
region	central Europe
culture	Corded Ware
epoch	Neolithic
group	CWC
comment	-
latitude	50.0099983215332
longitude	10.180000305175781
sex	M
site	Bergrheinfeld
site_detail	-
mt_hg	U5b1c2
ychr_hg	R1a1a1
year_from	-2829
year_to	-2465
date_detail	2829-2465 calBCE (4015±38 BP, UBA-27950)
bp	4015±38
c14_lab_code	UBA-27950
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R:CTS11647:23202551C->G', 'R1a1a1:M417:8533735G->A', 'R1a:L145:14138745C->A', 'R:F63:7177189G->A', 'R:M207:15581983A->G', 'R:F370:16856357T->C', 'R:F765:24360964G->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]