RISE471

FASTA

Metadata

Reference

Data

identifier	RISE471
alternative_identifiers	['burial 1']
country	Germany
continent	Europe
region	central Europe
culture	Corded Ware
epoch	Neolithic
group	CWC
comment	-
latitude	48.16999816894531
longitude	10.8100004196167
sex	M
site	Untermeitingen
site_detail	-
mt_hg	J1c1b
ychr_hg	R1b1a1a2a1a
year_from	-1691
year_to	-1519
date_detail	1691-1519 calBCE (3330±29 BP, OxA-32104)
bp	3330±29
c14_lab_code	OxA-32104
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1b1a1a2:L150.1:10008791C->T', 'R1:P294:7570822G->C', 'R:P227:21409706G->C', 'R1b1a1a2a1a:P310:18907236A->C', 'R1b1a1a:CTS5577:16376495A->C', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a1a:PF6418:6766034C->T', 'R1b1a:CTS4764:15803415G->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '185A', 'position': 185, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '295T', 'position': 295, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '3394C', 'position': 3394, 'status': 'Reported / Population-dependent', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Diabetes / CPTdeficiency / high altitude adaptation']}, {'allele': '462T', 'position': 462, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]