RISE479

FASTA

Metadata

Reference

Data

identifier	RISE479
alternative_identifiers	['ID 1129/1706 Q3 (P23)']
country	Hungary
continent	Europe
region	Pannonia
culture	Vatya
epoch	Bronze Age
group	BAHu
comment	-
latitude	47.34000015258789
longitude	18.899999618530273
sex	M
site	Erd
site_detail	Site 4
mt_hg	T2b
ychr_hg	I2a2a1a2a
year_from	-2000
year_to	-1500
date_detail	2000-1500 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2387:14286853T->C', 'I:CTS3384:14884659A->C', 'I:CTS6265:16780748C->G', 'I:CTS6751:17090238C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:Z16987:22243817A->Ghet', 'I:FI4:8873160G->T', 'I:M258:15023364T->C', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS11979:23401471C->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L847:23154034C->T', 'I:P38:14484379A->C', 'I:PF3829:22458740A->G', 'I2:L68:18700150C->T', 'I:CTS4848:15862842C->T', 'I:CTS4982:15937959C->T', 'I:L844.1:2884029T->C', 'I:PF3742:16354708G->A', 'I:CTS1301:7321418C->T', 'I:CTS3383:14884646C->T', 'I:CTS5263:16171560G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I2a2a1a2a:L1229:14937828C->A', 'I2a2a1a2:Z2057:4770006T->C', 'I2a2a1a2:Z2083:15379927T->C', 'I2a2a1a2:Z2093:19212180A->G', 'I2a2a1:CTS9183:18732197A->G', 'I2a2a:L34:7716262A->C', 'I2a2a:L59:7113556C->T', 'I2a2a:P222:18888200C->G', 'I2a2:P217:7628484C->T', 'I:CTS1006:7137088C->T', 'I:CTS4077:15377802G->A', 'I:CTS4745:15793946G->A', 'I:CTS5622:16397716C->A', 'I:CTS6343:16836079C->A', 'I:CTS6344:16836548G->A', 'I:CTS9269:18789763C->T', 'I:FGC2411:9900057A->G', 'I:FGC2418:4974832A->G', 'I:PF3574:2974782A->C', 'I:PF3586:3851589G->A', 'I:PF3596:4403308T->G', 'I:PF3601:5129448G->A', 'I:PF3649:8046731A->C', 'I:PF3654:8278628T->C', 'I:PF3666:8728974T->G', 'I:PF3670:8984184A->G', 'I:PF3695:13914715A->T', 'I:PF3759:17467526G->A', 'I:PF3809:21556106G->A', 'I:PF3847:23479970A->C', 'I:PF3864:7898045A->G', 'I:Y1847:5129449G->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]