RISE507

FASTA

Metadata

Reference

Data

identifier RISE507
alternative_identifiers ['5910-2A']
country Russia
continent Asia
region Altai
culture Afanasievo
epoch Bronze Age
group BARu
comment -
latitude 51.5
longitude 85.97000122070312
sex F
site River Kuyum
site_detail -
mt_hg U5a1a1
ychr_hg -
year_from -3322
year_to -2923
date_detail 3322-2923 calBCE (4423±29 BP, OxA-31219)
bp 4423±29
c14_lab_code OxA-31219
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]